../../tmp/servers/virsirnadb/234686725
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1402 | 1 | tccagcttgtgaataccaa | 19 | |
| D13558.1 | HPCJ483 Hepatitis C virus genome, complete sequence | 1573 | ................... | 1591 | 100 |
| D10750.1 | HPCJ491 Hepatitis C virus genome, complete sequence | 1573 | ................... | 1591 | 100 |
| D50485.1 | HPCK1S2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S2), complete g | 1561 | ................... | 1579 | 100 |
| D50481.1 | HPCK1R2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R2), complete g | 1561 | ................... | 1579 | 100 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 1573 | ................... | 1591 | 100 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 1573 | ................... | 1591 | 100 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 1574 | ................... | 1592 | 100 |
| AF054250.1 | Hepatitis C virus subtype 1b strain HC-J4, complete genome | 1563 | ................... | 1581 | 100 |
| AF165059.1 | Hepatitis C virus subtype 1b strain MD8-1, complete genome | 1561 | ................... | 1579 | 100 |
| AF165060.1 | Hepatitis C virus subtype 1b strain MD8-2, complete genome | 1561 | ................... | 1579 | 100 |
| AF207756.1 | Hepatitis C virus subtype 1b strain MD15, complete genome | 1561 | ................... | 1579 | 100 |
| AF207767.1 | Hepatitis C virus subtype 1b strain MD26, complete genome | 1561 | ................... | 1579 | 100 |
| AB049100.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT21 | 1542 | ................... | 1560 | 100 |
| EF032892.1 | Hepatitis C virus subtype 1b isolate BR1427_P1_10.7.03 polyprotein ge | 1549 | ................... | 1567 | 100 |
| EF032893.1 | Hepatitis C virus subtype 1b isolate BR1427_P3_11.10.03 polyprotein g | 1547 | ................... | 1565 | 100 |
| EU155230.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V160/2002, complet | 1521 | ................... | 1539 | 100 |
| D10934.1 | HPCRNA Hepatitis C virus RNA, complete genome sequence | 1573 | .............c..... | 1591 | 94 |
| AF207772.1 | Hepatitis C virus subtype 1b strain MD31, complete genome | 1561 | .............c..... | 1579 | 94 |
| AB049097.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19 | 1542 | .t................. | 1560 | 94 |
| AB154201.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 1561 | ........a.......... | 1579 | 94 |
| AB154202.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 1561 | .......c........... | 1579 | 94 |
| AY878652.1 | Hepatitis C virus subtype 6n isolate KM42, complete genome | 1540 | ..............t.... | 1558 | 94 |
| DQ278894.1 | Hepatitis C virus subtype 6n isolate KM42, complete genome | 1574 | ..............t.... | 1592 | 94 |
| DQ835768.1 | Hepatitis C virus subtype 6n isolate D86/93, complete genome | 1570 | ..............t.... | 1588 | 94 |
| EF638081.1 | Hepatitis C virus subtype 1b from Hubei, complete genome | 1529 | ..........a........ | 1547 | 94 |
| EF407475.1 | Hepatitis C virus isolate 3009 polyprotein gene, complete cds | 1505 | .............c..... | 1523 | 94 |
| EF407493.1 | Hepatitis C virus isolate 3031 polyprotein gene, complete cds | 1528 | .............c..... | 1546 | 94 |
| EF407504.1 | Hepatitis C virus isolate 8069 polyprotein gene, complete cds | 1527 | .............c..... | 1545 | 94 |
| EU155218.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V145/2005, complet | 1522 | ..........a........ | 1540 | 94 |
| EU482859.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V272/2003, complet | 1521 | .............c..... | 1539 | 94 |
| EU482881.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V383/2003, complet | 1524 | .............c..... | 1542 | 94 |
| EU155256.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V367/2006, complet | 1521 | .............c..... | 1539 | 94 |
| EU155259.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V374/2006, complet | 1521 | .............c..... | 1539 | 94 |
| EU155281.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V512/2005, complet | 1521 | .............c..... | 1539 | 94 |
| EU155306.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V352/2002, complet | 1521 | ..........a........ | 1539 | 94 |
| EU155365.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V289/2006, complet | 1521 | ..........a........ | 1539 | 94 |
| EU155372.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V306/2004, complet | 1521 | .............c..... | 1539 | 94 |
| EU256091.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V455/2006, complet | 1239 | .............c..... | 1257 | 94 |
| EU256099.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V348/2002, complet | 1521 | .............c..... | 1539 | 94 |
| EU256075.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V279/2004, complet | 1521 | .............c..... | 1539 | 94 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 1573 | .............c..... | 1591 | 94 |
| AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 1576 | .............c..... | 1594 | 94 |
| D50482.1 | HPCK1R3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R3), complete g | 1561 | ..........a..c..... | 1579 | 89 |
| D50484.1 | HPCK1S3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S3), complete g | 1561 | ..........a..c..... | 1579 | 89 |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 1573 | ..........a.....a.. | 1591 | 89 |
| AJ000009.1 | Hepatitis C virus complete genome sequence | 1556 | ..........a..c..... | 1574 | 89 |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 1573 | ..........a..c..... | 1591 | 89 |
| AJ238800.1 | Hepatitis C virus type 1b complete genome, isolate NC1 | 1232 | ..........a..c..... | 1250 | 89 |
| AF207758.1 | Hepatitis C virus subtype 1b strain MD17, complete genome | 1564 | ..........a..c..... | 1582 | 89 |
| AF207759.1 | Hepatitis C virus subtype 1b strain MD18, complete genome | 1561 | .............ct.... | 1579 | 89 |
| AF207764.1 | Hepatitis C virus subtype 1b strain MD23, complete genome | 1561 | ....a.........t.... | 1579 | 89 |
| AF207765.1 | Hepatitis C virus subtype 1b strain MD24, complete genome | 1561 | .............ct.... | 1579 | 89 |
| AB049093.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT15 | 1542 | .............c..t.. | 1560 | 89 |
| AB049098.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT20 | 1542 | ..........a..c..... | 1560 | 89 |
| AF483269.1 | Hepatitis C virus type 1b isolate HCV-TR1 from Turkey, complete genom | 1538 | ..........a..c..... | 1556 | 89 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 1573 | ..........a.....a.. | 1591 | 89 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 1573 | ..........a..c..... | 1591 | 89 |
| AB154177.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 1561 | ..........a..c..... | 1579 | 89 |
| AB154178.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 1561 | ..........a..c..... | 1579 | 89 |
| AB154190.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 1561 | ..........a..c..... | 1579 | 89 |
| AB154198.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 1561 | ..........a..c..... | 1579 | 89 |
| EF407483.1 | Hepatitis C virus isolate 4043 polyprotein gene, complete cds | 1548 | ..........a..c..... | 1566 | 89 |
| EF407492.1 | Hepatitis C virus isolate 7025 polyprotein gene, complete cds | 1513 | ..........a..c..... | 1531 | 89 |
| EU234061.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V126/1991, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155219.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V146/2002, complet | 1521 | .............ct.... | 1539 | 89 |
| EU155220.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V147/2004, complet | 1507 | ..........a..c..... | 1525 | 89 |
| EU155234.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V447/2006, complet | 1522 | ..........a..c..... | 1540 | 89 |
| EU155235.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V449/2006, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU482839.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V370/2006, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU482877.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V342/2001, complet | 1527 | ..........a..c..... | 1545 | 89 |
| EU482885.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V448/2006, complet | 1524 | ..........a..c..... | 1542 | 89 |
| EU155257.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V369/2006, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155260.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V375/2006, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155279.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V441/2001, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155303.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V346/2001, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155308.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V354/2003, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155325.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V122/1991, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155327.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V125/1992, complet | 1514 | ..........a..c..... | 1532 | 89 |
| EU155329.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V128/1992, complet | 1521 | ...g.........c..... | 1539 | 89 |
| EU155333.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V133/1989, complet | 1510 | ..........a..c..... | 1528 | 89 |
| EU155334.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V134/1990, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155336.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V139/1992, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155358.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V276/2004, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155361.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V281/2004, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155368.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V296/2001, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155370.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V300/2005, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU155371.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V301/2005, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU660388.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V154/2001, complet | 1522 | ..........a..c..... | 1540 | 89 |
| EU256062.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V368/2006, complet | 1524 | .............c..t.. | 1542 | 89 |
| EU256064.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V376/2006, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU256090.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V162/2002, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU256101.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V351/2002, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU256001.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V144/2002, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU256054.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V443/2001, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU256077.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V283/2005, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU256081.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V293/2002, complet | 1521 | ..........a..c..... | 1539 | 89 |
| EU256082.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V298/2005, complet | 1522 | ..........a..c..... | 1540 | 89 |
| FJ390398.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1750/2008, comple | 1521 | ..........a..c..... | 1539 | 89 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 1574 | ..........a..c..... | 1592 | 89 |
| AF207766.1 | Hepatitis C virus subtype 1b strain MD25, complete genome | 1561 | ..........a..c..g.. | 1579 | 84 |
| AF207770.1 | Hepatitis C virus subtype 1b strain MD29, complete genome | 1561 | ..........a..c..a.. | 1579 | 84 |
| EF407488.1 | Hepatitis C virus isolate 8016 polyprotein gene, complete cds | 1517 | ..........a..c...g. | 1535 | 84 |
| EU155222.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V150/2004, complet | 1521 | ..........a..ct.... | 1539 | 84 |
| EU482833.1 | Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V503/2003, complet | 1521 | ..........a..ct.... | 1539 | 84 |
| EU482860.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V302/2003, complet | 1521 | ..........a..c..a.. | 1539 | 84 |
| EU408326.1 | Hepatitis C virus isolate 537798 polyprotein precursor, gene, complet | 1570 | .a...........c.g... | 1588 | 84 |
| EU256080.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V292/2002, complet | 1521 | ..........a..c.g... | 1539 | 84 |
| AF208024.1 | Hepatitis C virus subtype 1b strain MD34, complete genome | 1555 | ..........a..a..___ | 1570 | 73 |
| DQ835762.1 | Hepatitis C virus subtype 6i isolate C-0159, complete genome | 7783 | ...........g.._____ | 7796 | 68 |
| U89019.1 | HCU89019 Hepatitis C virus subtype 1b, complete genome | 9140 | _____............__ | 9151 | 63 |